Files in kkrismer/transite

RNA-binding protein motif analysis

R/AllClasses.R R/RcppExports.R R/combine-p-values.R R/data.R R/k-mer-based.R R/main.R R/matrix-based.R R/methods-RBPMotif.R R/methods-SpectrumScore.R R/misc.R R/spectrum.R R/transite-package.R R/zzz.R README.md man/RBPMotif-class.Rd man/SpectrumScore-class.Rd man/calculate_kmer_enrichment.Rd man/calculate_local_consistency.Rd man/calculate_motif_enrichment.Rd man/calculate_transcript_mc.Rd man/check_kmers.Rd man/classify_spectrum.Rd man/compute_kmer_enrichment.Rd man/count_homopolymer_corrected_kmers.Rd man/create_kmer_motif.Rd man/create_kmer_origin_list.Rd man/create_matrix_motif.Rd man/draw_volcano_plot.Rd man/estimate_significance.Rd man/estimate_significance_core.Rd man/ge.Rd man/generate_iupac_by_kmers.Rd man/generate_iupac_by_matrix.Rd man/generate_kmers.Rd man/generate_kmers_from_iupac.Rd man/generate_permuted_enrichments.Rd man/geometric_mean.Rd man/get_motif_by_id.Rd man/get_motif_by_rbp.Rd man/get_motifs.Rd man/get_motifs_meta_info.Rd man/get_ppm.Rd man/init_iupac_lookup_table.Rd man/kmers_enrichment.Rd man/motifs.Rd man/p_combine.Rd man/run_kmer_spma.Rd man/run_kmer_tsma.Rd man/run_matrix_spma.Rd man/run_matrix_tsma.Rd man/score_sequences.Rd man/score_spectrum.Rd man/score_transcripts.Rd man/score_transcripts_single_motif.Rd man/set_motifs.Rd man/subdivide_data.Rd man/toy_motif_matrix.Rd man/transite.Rd tests/testthat.R tests/testthat/test-combine-p-values.R tests/testthat/test-k-mer-based.R tests/testthat/test-main.R tests/testthat/test-matrix-based.R tests/testthat/test-misc.R tests/testthat/test-spectrum.R vignettes/spma.Rmd