get_ppm: Get Position Probability Matrix (PPM) from motif object

In kkrismer/transite: RNA-binding protein motif analysis

Get Position Probability Matrix (PPM) from motif object

Description

Return the position probability matrix of the specified motif.

Usage

get_ppm(motif)

Arguments

motif

object of class RBPMotif

Value

The position probability matrix of the specified motif

See Also

Other motif functions: generate_iupac_by_kmers(), generate_iupac_by_matrix(), generate_kmers_from_iupac(), get_motif_by_id(), get_motif_by_rbp(), get_motifs(), get_motifs_meta_info(), init_iupac_lookup_table(), set_motifs()

Examples

get_ppm(get_motif_by_id("M178_0.6")[[1]])

kkrismer/transite documentation built on Feb. 9, 2024, 3:23 a.m.