motifs: Transite Motif Database
In kkrismer/transite: RNA-binding protein motif analysis

motifs

R Documentation

Transite Motif Database

Description

The Transite motif database contains sequence motifs and associated k-mers of more than 100 different RNA-binding proteins, obtained from publicly available motif databases.

Usage

data(motifs)

Format

A list of lists with the following components:

`id`	motif id
`rbps`	gene symbols of RNA-binding proteins associated with motif
`matrix`	data frame of sequence motif (position weight matrix)
`hexamers`	all motif-associated hexamers
`heptamers`	all motif-associated heptamers
`length`	length of motif in nucleotides
`iupac`	IUPAC string of sequence motif
`type`	type of motif, e.g., RNAcompete
`species`	usually human
`src`	source of motif, e.g., RNA Zoo