kmers_enrichment: Example _k_-mer Enrichment Data

In kkrismer/transite: RNA-binding protein motif analysis

Example k-mer Enrichment Data

Description

This data frame with k-mer enrichment data (as produced by run_kmer_tsma) is used in a code example for k-mer volcano plot function draw_volcano_plot.

Usage

data(kmers_enrichment)

Format

A data frame with the following columns:

kmer	contains all hexamers (AAAAAA to UUUUUU)
foreground_count	absolute k-mer frequency in foreground set
background_count	absolute k-mer frequency in background set
enrichment	enrichment of k-mer in foreground relative to background
p_value	associated p-value of enrichment
adj_p_value	multiple testing corrected p-value

kkrismer/transite documentation built on July 13, 2024, 8:01 a.m.