API for kmezhoud/canceR
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
| Global functions | |
|---|---|
| CGDS | Man page |
| GSEA | Man page Source code |
| GSEA.Analyze.Sets | Man page Source code |
| GSEA.ConsPlot | Man page Source code |
| GSEA.EnrichmentScore | Man page Source code |
| GSEA.EnrichmentScore2 | Man page Source code |
| GSEA.Gct2Frame | Man page Source code |
| GSEA.Gct2Frame2 | Man page Source code |
| GSEA.GeneRanking | Man page Source code |
| GSEA.HeatMapPlot | Man page Source code |
| GSEA.HeatMapPlot2 | Man page Source code |
| GSEA.NormalizeCols | Man page Source code |
| GSEA.NormalizeRows | Man page Source code |
| GSEA.ReadClsFile | Man page Source code |
| GSEA.Res2Frame | Man page Source code |
| GSEA.Threshold | Man page Source code |
| GSEA.VarFilter | Man page Source code |
| GSEA.write.gct | Man page |
| GSNormalize | Source code |
| Match_GeneList_MSigDB | Man page Source code |
| OLD.GSEA.EnrichmentScore | Man page Source code |
| Run.GSEA | Man page Source code |
| UnifyRowNames | Man page Source code |
| `canceR_Issue` | Source code |
| `canceR_Vignette` | Source code |
| about | Man page Source code |
| canceR | Man page Source code |
| canceR_Issue | Man page |
| canceR_Vignette | Man page |
| cbind.na | Man page Source code |
| dialogGeneClassifier | Man page Source code |
| dialogMetOption | Man page Source code |
| dialogMut | Man page Source code |
| dialogOptionCircos | Man page Source code |
| dialogOptionGSEAlm | Man page Source code |
| dialogOptionPhenoTest | Man page Source code |
| dialogPlotOption_SkinCor | Man page Source code |
| dialogSamplingGSEA | Man page Source code |
| dialogSelectFiles_GSEA | Man page Source code |
| dialogSpecificMut | Man page Source code |
| dialogSummary_GSEA | Man page Source code |
| dialoggetGeneListMSigDB | Man page Source code |
| displayInTable | Man page Source code |
| getCases | Man page Source code |
| getCasesGenProfs | Man page Source code |
| getCircos | Man page Source code |
| getClinicData_MultipleCases | Man page Source code |
| getClinicalDataMatrix | Man page Source code |
| getCor_ExpCNAMet | Man page Source code |
| getFreqMutData | Man page Source code |
| getGCTCLSExample | Man page Source code |
| getGCT_CLSfiles | Man page Source code |
| getGSEAlm_Diseases | Man page Source code |
| getGSEAlm_Variables | Man page Source code |
| getGenProfs | Man page Source code |
| getGeneExpMatrix | Man page Source code |
| getGeneList | Man page Source code |
| getGeneListExample | Man page Source code |
| getGeneListFromMSigDB | Man page Source code |
| getGenesClassifier | Man page Source code |
| getGenesTree_MultipleCases | Man page Source code |
| getGenesTree_SingleCase | Man page Source code |
| getInTable | Man page Source code |
| getListProfData | Man page Source code |
| getMSigDB | Man page Source code |
| getMSigDBExample | Man page Source code |
| getMSigDBfile | Man page Source code |
| getMegaProfData | Man page Source code |
| getMetDataMultipleGenes | Man page Source code |
| getMutData | Man page Source code |
| getPhenoTest | Man page Source code |
| getProfData | Man page Source code |
| getProfilesDataMultipleGenes | Man page Source code |
| getProfilesDataSingleGene | Man page Source code |
| getSpecificMut | Man page Source code |
| getSummaryGSEA | Man page Source code |
| getSurvival | Man page Source code |
| getTextWin | Man page Source code |
| geteSet | Man page Source code |
| lmPerGene | Source code |
| modalDialog | Man page Source code |
| myGlobalEnv | Man page |
| plotModel | Man page Source code |
| plot_1Gene_2GenProfs | Man page Source code |
| plot_2Genes_1GenProf | Man page Source code |
| pvalFromPermMat | Source code |
| rbind.na | Man page Source code |
| setWorkspace | Man page Source code |
| test.CGDS | Man page |
| testCheckedCaseGenProf | Man page Source code |
