kokonech/InTAD: Search for correlation between epigenetic signals and gene expression in TADs
The package is focused on the detection of correlation between expressed genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data) either within topologically associated domains (TADs) or between chromatin contact loop anchors. Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.
Getting started
Browse package contents
Package details |
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| Author | Konstantin Okonechnikov, Serap Erkek, Lukas Chavez |
| Bioconductor views | ChIPSeq Epigenetics GeneExpression HiC ImmunoOncology RNASeq Sequencing |
| Maintainer | Konstantin Okonechnikov <k.okonechnikov@gmail.com> |
| License | GPL (>=2) |
| Version | 1.11.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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