API for kordastilab/ImmunoCluster
Fast and accesible Immune profiling CyTOF data
| Global functions | |
|---|---|
| biaxial_plot | Man page Source code |
| clusKNN | Source code |
| clusSignificancePlot | Source code |
| contourPlot | Source code |
| density_plot | Man page Source code |
| diffClust | Source code |
| diffExpression | Source code |
| diffPlot | Source code |
| downsampleByVar | Source code |
| imc_rank | Man page Source code |
| importData | Source code |
| markerEnrichment | Source code |
| markerExpression | Man page Source code |
| markerExpressionPerCluster | Source code |
| markerExpressionPerSample | Source code |
| mdsplot | Man page Source code |
| medianHeatmap | Source code |
| metadataPlot | Source code |
| performTSNE | Man page Source code |
| performUMAP | Man page Source code |
| plotAbundance | Man page Source code |
| plotClusters | Source code |
| plotSignatures | Source code |
| processFCS | Man page Source code |
| runFlowSOM | Man page Source code |
| runPhenograph | Man page Source code |
| save_pheatmap_pdf | Source code |
| setClusterIdents | Man page Source code |
| stat_test_clust | Man page Source code |
| stat_test_expression | Man page Source code |
| subsetSCE | Source code |
| subset_sce_metadata | Man page Source code |
| volcanoPlot | Man page Source code |
| writeToFlowSet | Source code |
| write_sce_to_fcs | Man page Source code |
