setClusterIdents: Relabel clustering identities in sce metadata.
In kordastilab/ImmunoCluster: Fast and accesible Immune profiling CyTOF data
Description
Usage
Arguments
Value
View source: R/setClusterIdents.R
Description
Relabel clustering identities in sce metadata.
Usage
1
setClusterIdents(sce, orig.ident, new.ident, clustering = "phenograph")
Arguments
sce
a SingleCellExperiment.
orig.ident
a vector of original cluster names present.
new.ident
a vector of the same length with the new cluster identities to map orig.ident to.
clustering
the name of the clustering metadata slot to map the orig.ident to.
Value
an sce with a new metadata slot called 'cell_annotation' containing the new cluster mappings.
kordastilab/ImmunoCluster documentation built on May 10, 2021, 7:41 a.m.
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Description Usage Arguments Value
View source: R/setClusterIdents.R
Description
Relabel clustering identities in sce metadata.
Usage
1 | setClusterIdents(sce, orig.ident, new.ident, clustering = "phenograph")
|
Arguments
sce |
a |
orig.ident |
a vector of original cluster names present. |
new.ident |
a vector of the same length with the new cluster identities to map orig.ident to. |
clustering |
the name of the clustering metadata slot to map the orig.ident to. |
Value
an sce with a new metadata slot called 'cell_annotation' containing the new cluster mappings.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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