imc_rank: Creates a ranked heatmap based on SingleCellExperiment object
In kordastilab/ImmunoCluster: Fast and accesible Immune profiling CyTOF data

Description Usage Arguments Value Author(s)

Creates a ranked heatmap based on SingleCellExperiment object

imc_rank(
  indata,
  grouping = NULL,
  clusters = unique(indata@metadata[, grouping]),
  markers = rownames(indata),
  feature = NULL,
  feature_cols = NULL,
  heat_bar = "YlOrRd",
  scale_01 = TRUE,
  display_numbers = TRUE
)

`indata`	a `SingleCellExperiment`.
`grouping`	The metadata grouping to create the median marker exrpression out of
`clusters`	The specific clusters from this grouping to select
`markers`	Markers to include for the heatmap
`feature`	A metadata feature to overlay on the heatmap as an annotation bar
`feature_cols`	Colors for reature bar annotation
`heat_bar`	The 'RColorBrewer' heat_bar color ramp designation
`scale_01`	A logical determining whether to scale the data
`display_numbers`	A logical determining whether to display data in heatmap cells