runPhenograph: run Rphenograph implementation from...
In kordastilab/ImmunoCluster: Fast and accesible Immune profiling CyTOF data
Description
Usage
Arguments
Value
View source: R/runPhenograph.R
Description
run Rphenograph implementation from "JinmiaoChenLab/Rphenograph" clustering on sce expression data
Usage
1
runPhenograph(sce, k = 30, markers = NULL, set_seed = 4321)
Arguments
sce
a SingleCellExperiment.
k
a number of desired clusters to cluster cell data into.
markers
a vector of selected markers, representing sce colnames to use for clustering
set_seed
set the random seed for clustering reproducibility
Value
a SingleCellExperiment object with a new metadata slot with cluster identities.
kordastilab/ImmunoCluster documentation built on May 10, 2021, 7:41 a.m.
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Description Usage Arguments Value
View source: R/runPhenograph.R
Description
run Rphenograph implementation from "JinmiaoChenLab/Rphenograph" clustering on sce expression data
Usage
1 | runPhenograph(sce, k = 30, markers = NULL, set_seed = 4321)
|
Arguments
sce |
a |
k |
a number of desired clusters to cluster cell data into. |
markers |
a vector of selected markers, representing sce colnames to use for clustering |
set_seed |
set the random seed for clustering reproducibility |
Value
a SingleCellExperiment object with a new metadata slot with cluster identities.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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