subset_sce_metadata: Subset the sce object based on a column of the metadata table

In kordastilab/ImmunoCluster: Fast and accesible Immune profiling CyTOF data

Description

Subset the sce object based on a column of the metadata table

Usage

subset_sce_metadata(sce, ...)

Arguments

sce	a SingleCellExperiment.
...	a conditional statement to subset the SCE by metadata slot.

Value

a subsetted sce SingleCellExperiment.

Examples

 # Subset the sce_gvhd object based on the 'cell_annotation' label in the metadata table
 sce_cd4 = subset_sce_metadata(sce_gvhd, cell_annotation %in% c("CD4+ T Cells", "Basophils"))

kordastilab/ImmunoCluster documentation built on May 10, 2021, 7:41 a.m.