volcanoPlot: Generate a volcano plot using statistical testing output

Description Usage Arguments Value Author(s)

View source: R/volcanoPlot.R

Description

Generate a volcano plot using statistical testing output

Usage

1
volcanoPlot(pval_df, p_val = "padj", threshold = 0.1)

Arguments

pval_df

a dataframe that contains a column name "logfc" and a statistical testing output p values.

p_val

a string identifying the column name from pval_df to plot as p values

threshold

a numeric representing the p_value threshold on which to colour points on the volcano plot

Value

a ggplot object.

Author(s)

James Opzoomer james.opzoomer@kcl.ac.uk


kordastilab/ImmunoCluster documentation built on May 10, 2021, 7:41 a.m.