write_sce_to_fcs: Export an SCE to.fcs format
In kordastilab/ImmunoCluster: Fast and accesible Immune profiling CyTOF data

Description Usage Arguments Value Author(s) Examples

Takes as input a SingleCellExperiment object and writes the data contained into an .fcs file

write_sce_to_fcs(
  sce,
  filename = "export.fcs",
  clustering = NULL,
  reduced_dim = NULL
)

`sce`	a `SingleCellExperiment`.
`filename`	the .fcs file name to export, default is export.fcs
`clustering`	optional metadata clustering (or other) slots to export as parameters in the .fcs file
`reduced_dim`	optional dimensionality reduction coordinates to export as a parameters in the .fcs file

a .fcs file

James Opzoomer james.opzoomer@kcl.ac.uk

# Download complete ImmunoCluster SCE object from zenodo
sce_gvhd = readRDS(url("https://zenodo.org/record/3801882/files/sce_gvhd.rds"))

# write sct to fcs
write_sce_to_fcs(sce_gvhd, filename = "export.fcs")