Files in kordastilab/ImmunoCluster
Fast and accesible Immune profiling CyTOF data
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ImportData.R
R/biaxial_plot.R
R/clusKNN.R
R/clusSignificancePlot.R
R/contourPlot.R
R/density_plot.R
R/diffClust.R
R/diffExpression.R
R/diffPlot.R
R/downsampleByVar.R
R/imc_rank.R
R/markerEnrichment.R
R/markerExpression.R
R/markerExpressionPerCluster.R
R/markerExpressionPerSample.R
R/mdsplot.R
R/medianHeatmap.R
R/metadataPlot.R
R/performTSNE.R
R/performUMAP.R
R/plotAbundance.R
R/plotClusters.R
R/plotSignatures.R
R/processFCS.R
R/runFlowSOM.R
R/runPhenograph.R
R/save_pheatmap_pdf.R
R/setClusterIdents.R
R/stat_test_clust.R
R/stat_test_expression.R
R/subsetSCE.R
R/subset_sce_metadata.R
R/volcanoPlot.R
R/writeToFlowSet.R
R/write_sce_to_fcs.R
README.Rmd
README.md
README_files/figure-gfm/abundance test-1.png
README_files/figure-gfm/activation markers-1.png
README_files/figure-gfm/bar plot-1.png
README_files/figure-gfm/cell annotations-1.png
README_files/figure-gfm/density plot-1.png
README_files/figure-gfm/diagnostic heatmap-1.png
README_files/figure-gfm/final heatmap-1.png
README_files/figure-gfm/marker test-1.png
README_files/figure-gfm/mds_plot-1.png
README_files/figure-gfm/merge clusters-1.png
README_files/figure-gfm/sample heatmap-1.png
README_files/figure-gfm/unnamed-chunk-2-1.png
README_files/figure-gfm/viz flowSOM-1.png
immunoCluster.Rproj
man/biaxial_plot.Rd
man/density_plot.Rd
man/imc_rank.Rd
man/markerExpression.Rd
man/mdsplot.Rd
man/performTSNE.Rd
man/performUMAP.Rd
man/plotAbundance.Rd
man/processFCS.Rd
man/runFlowSOM.Rd
man/runPhenograph.Rd
man/setClusterIdents.Rd
man/stat_test_clust.Rd
man/stat_test_expression.Rd
man/subset_sce_metadata.Rd
man/volcanoPlot.Rd
man/write_sce_to_fcs.Rd
readme_bib.bib
