Man pages for kristenmf/flowR
Flow Cytometry and Single Cell Analysis
| aDist_mtx | Calculates the Aitchison (compositional) distance between... |
| comp_svd | Spectral Map Analysis Input V must be linear |
| CQ | Calculates eigenvalue spectrum at different values of q |
| do_plots | makes lineplots |
| get_bins_lineplot | splits a datamatrix D into bins with respect to the output of... |
| get_xtab | After binning the data, make a table with the nearly empty... |
| GRV | calculates the generalised RV coefficient of two matrices |
| logratio_data | transforms compositional data for a biplot. First, each row... |
| make_bins | bins a dimension-reduced pooled dataset. Can be with PCA or... |
| make_biplot | make a biplot from a singular value decomposition |
| make_breaks | Calculates common breaks of all datasets for each channel |
| make_burt | Converts each matrix into a burt matrix, consisting of marker... |
| make_cell_coexp | For every possible pair of markers, find the ratio of the... |
| make_cross_correlation | Finds the cross-correlation between total frequencies and... |
| make_grid_index | This takes a combined data matrix (generally dimension has... |
| make_lineplot_data | puts a data matrix (compensated, uncompensated) into a format... |
| make_rsq | Looks at the relationship between correlation of total marker... |
| make_sample_coexp | Finds the ratio of marker frequency in a sample to average... |
| make_twoD_marginal | For every possible pair of markers, find the ratio of the... |
| mtx_thres | Threshold a correlation matrix such that all values less than... |
| outlier_pretrim | trim the data before starting |
| replace_zero | replaces zero with a small value |
| row_col_center | pre-processing a data matrix for spectral map analysis |
| sample_data | take samples from data. Always use with set.seed for... |
