make_sample_coexp: Finds the ratio of marker frequency in a sample to average...

In kristenmf/flowR: Flow Cytometry and Single Cell Analysis

Description

Finds the ratio of marker frequency in a sample to average marker frequency. This is counting 'total positive' for each marker, e.g. the bulk behaviour. Events may be double-counted, e.g. cells which are IL17-IL22 double positive are counted twice in IL17 total counts and IL22 total counts.

Usage

make_sample_coexp(burt)

Arguments

burt	, output of make_burt

Value

A matrix, where each row is a vector of the ratio of a sample's total marker frequency to the average total marker frequency (averaged over all samples). Columns are markers, additionally the final column is the number of unstained cells. When a marker combination doesn't appear in the sample, a value of 1 is given.

kristenmf/flowR documentation built on May 20, 2019, 6:15 p.m.