Description Usage Arguments Value
Finds the ratio of marker frequency in a sample to average marker frequency. This is counting 'total positive' for each marker, e.g. the bulk behaviour. Events may be double-counted, e.g. cells which are IL17-IL22 double positive are counted twice in IL17 total counts and IL22 total counts.
1 | make_sample_coexp(burt)
|
burt |
, output of make_burt |
A matrix, where each row is a vector of the ratio of a sample's total marker frequency to the average total marker frequency (averaged over all samples). Columns are markers, additionally the final column is the number of unstained cells. When a marker combination doesn't appear in the sample, a value of 1 is given.
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