Man pages for kristenmf/flowR
Flow Cytometry and Single Cell Analysis

aDist_mtxCalculates the Aitchison (compositional) distance between...
comp_svdSpectral Map Analysis Input V must be linear
CQCalculates eigenvalue spectrum at different values of q
do_plotsmakes lineplots
get_bins_lineplotsplits a datamatrix D into bins with respect to the output of...
get_xtabAfter binning the data, make a table with the nearly empty...
GRVcalculates the generalised RV coefficient of two matrices
logratio_datatransforms compositional data for a biplot. First, each row...
make_binsbins a dimension-reduced pooled dataset. Can be with PCA or...
make_biplotmake a biplot from a singular value decomposition
make_breaksCalculates common breaks of all datasets for each channel
make_burtConverts each matrix into a burt matrix, consisting of marker...
make_cell_coexpFor every possible pair of markers, find the ratio of the...
make_cross_correlationFinds the cross-correlation between total frequencies and...
make_grid_indexThis takes a combined data matrix (generally dimension has...
make_lineplot_dataputs a data matrix (compensated, uncompensated) into a format...
make_rsqLooks at the relationship between correlation of total marker...
make_sample_coexpFinds the ratio of marker frequency in a sample to average...
make_twoD_marginalFor every possible pair of markers, find the ratio of the...
mtx_thresThreshold a correlation matrix such that all values less than...
outlier_pretrimtrim the data before starting
replace_zeroreplaces zero with a small value
row_col_centerpre-processing a data matrix for spectral map analysis
sample_datatake samples from data. Always use with set.seed for...
kristenmf/flowR documentation built on May 19, 2017, 5:59 a.m.