GetAssayData: General accessor function for the Assay class

In lambdamoses/SeuratBasics: Slimmed down version of Seurat

Description

This function can be used to pull information from any of the slots in the Assay class. For example, pull one of the data matrices("counts", "data", or "scale.data").

Usage

GetAssayData(object, ...)

## S3 method for class 'Assay'
GetAssayData(object, slot = "data", ...)

## S3 method for class 'Seurat'
GetAssayData(object, slot = "data", assay = NULL, ...)

Arguments

object	An object
...	Arguments passed to other methods
slot	Specific information to pull (i.e. counts, data, scale.data, ...)
assay	Name of assay to pull data from

Value

Returns info from requested slot

Examples

# Get the data directly from an Assay object
GetAssayData(object = pbmc_small[["RNA"]], slot = "data")[1:5,1:5]

# Get the data from a specific Assay in a Seurat object
GetAssayData(object = pbmc_small, assay = "RNA", slot = "data")[1:5,1:5]

lambdamoses/SeuratBasics documentation built on May 6, 2020, 9:32 a.m.