Loadings: Get feature loadings

In lambdamoses/SeuratBasics: Slimmed down version of Seurat

Description

Get feature loadings

Add feature loadings

Usage

Loadings(object, ...)

Loadings(object, ...) <- value

## S3 method for class 'DimReduc'
Loadings(object, projected = FALSE, ...)

## S3 method for class 'Seurat'
Loadings(object, reduction = "pca", projected = FALSE, ...)

## S3 replacement method for class 'DimReduc'
Loadings(object, projected = TRUE, ...) <- value

Arguments

object	An object
...	Arguments passed to other methods
value	Feature loadings to add
projected	Pull the projected feature loadings?
reduction	Name of reduction to pull feature loadings for

Examples

# Get the feature loadings for a given DimReduc
Loadings(object = pbmc_small[["pca"]])[1:5,1:5]

# Get the feature loadings for a specified DimReduc in a Seurat object
Loadings(object = pbmc_small, reduction = "pca")[1:5,1:5]

# Set the feature loadings for a given DimReduc
new.loadings <- Loadings(object = pbmc_small[["pca"]])
new.loadings <- new.loadings + 0.01
Loadings(object = pbmc_small[["pca"]]) <- new.loadings

lambdamoses/SeuratBasics documentation built on May 6, 2020, 9:32 a.m.