subset.Seurat: Subset a Seurat object
In lambdamoses/SeuratBasics: Slimmed down version of Seurat

Description Usage Arguments Value See Also Examples

Subset a Seurat object

## S3 method for class 'Seurat'
x[i, j, ...]

## S3 method for class 'Seurat'
subset(x, subset, cells = NULL, features = NULL, idents = NULL, ...)

`x`	Seurat object to be subsetted
`i, features`	A vector of features to keep
`j, cells`	A vector of cells to keep
`...`	Extra parameters passed to `WhichCells`, such as `slot`, `invert`, or `downsample`
`subset`	Logical expression indicating features/variables to keep
`idents`	A vector of identity classes to keep

A subsetted Seurat object

subset WhichCells

pbmc_small[VariableFeatures(object = pbmc_small), ]
pbmc_small[, 1:10]

subset(x = pbmc_small, subset = MS4A1 > 4)
subset(x = pbmc_small, subset = `DLGAP1-AS1` > 2)
subset(x = pbmc_small, idents = '0', invert = TRUE)
subset(x = pbmc_small, subset = MS4A1 > 3, slot = 'counts')
subset(x = pbmc_small, features = VariableFeatures(object = pbmc_small))