example_clusters: Randomly generated example datasets for XINA users. A dataset...

In langholee/XINA: Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network Analysis

Description

• aligned. XINA clustering results aligned by conditions

• data_column. Column names for data matrix

• out_dir. Not available in this example dataset

• nClusters. The number of user-desired clusters. It's 30 in the example.

• max_cluster. The number of clusters found in the dataset. It's 21 in the example.

• chosen_model. The chosen covariance model for the example dataset. It's VEI in the example

• optimal_BIC. BIC at the optimized clustering. It's 29473.57 in the example

• condition. The experimental conditions in the dataset.

• color_for_condition. The default color for the conditions that will be used in XINA plot drawing.

• color_for_clusters. The default color for the clusters that will be used in XINA clustering plot.

• norm_method. The used normalization method to standardize the input data. It's "sum_normalization" in the example.

Format

A list with the example XINA clustering result

langholee/XINA documentation built on March 17, 2020, 5:23 p.m.