get_unknown_ppi_nodes: get_unknown_ppi_nodes

In langholee/XINA: Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network Analysis

Description

Get proteins with no known interactions within the cluster based on the used protein-protein interaction database source

Usage

get_unknown_ppi_nodes(xina_result, cl)

Arguments

xina_result	A list containing XINA network analysis results. See xina_analysis
cl	the clustering number of XINA clustering results. See xina_clustering

Value

A data frame containing proteins with no known interactions within the cluster based on the used protein-protein interaction database source

Examples

# load XINA example data
data(xina_example)

# load the previously processed XINA analysis results
# if you want to learn how to run 'xina_analysis', please see \link[XINA]{xina_analysis}
data(xina_result_example)

# Extract unknown PPI nodes in the cluster #1
get_unknown_ppi_nodes(xina_result_example, 1)

langholee/XINA documentation built on March 17, 2020, 5:23 p.m.