draw_alluvial_plot: draw_alluvial_plot

In langholee/XINA: Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network Analysis

Description

'draw_alluvial_plot' draw a alluvial plot

Usage

draw_alluvial_plot(clustering_result, selected_conditions, count_table,
  alluvia_colors = NULL, cex = 0.7, alpha = 0.3)

Arguments

clustering_result	A list containing XINA clustering results. See xina_clustering.
selected_conditions	A vector of condition names used in XINA clustering results. The number of selected conditions should be at least two.
count_table	A data frame generated by using count.
alluvia_colors	A vector containing the user-defined colors for each alluvium.
cex	Size of cluster number on block axis. Default if 0.7. See alluvial.
alpha	Transparency of alluvia colors. Default is 0.3. See alluvial.

Value

An alluvial plot displaying comigrations and the data frame containing the input count_table with colors.

Examples

# load XINA example data
data(xina_example)

# get a vector of experimental conditions analyzed in the clustering results
classes <- as.vector(example_clusters$condition)

comigrations_size_over5 <- alluvial_enriched(example_clusters, classes, comigration_size=5)
draw_alluvial_plot(example_clusters, classes, comigrations_size_over5)

langholee/XINA documentation built on March 17, 2020, 5:23 p.m.