Files in lefeverde/QSPpaper
Analysis notebooks and functions for NAFLD QSP paper

DESCRIPTION

LICENSE

NAMESPACE

QSPpaper.Rproj

R/cmap.R R/degs.R R/pathways.R R/plot_helpers.R R/utils.R README.md

inst/extdata/test_cmap_res.rds

inst/extdata/test_gene_set.RData

inst/extdata/test_sig_500x978.gctx_n500x978.gctx

man/add_p_vals_to_cmap_para.Rd man/add_p_vals_to_cmap_single.Rd man/best_score_mat.Rd man/best_score_top20.Rd man/broad_cmap_score.Rd man/calculate_ncs.Rd man/calculate_pert_cell_score.Rd man/calculate_pert_score.Rd man/chunker.Rd man/create_annot_leg_params.Rd man/create_gsea_plot_data.Rd man/create_heatmap_leg_params.Rd man/gctx_to_sigList.Rd man/get_random_cmap_scores.Rd man/kegg_gsea_by_coef.Rd man/lincs2017_score_top20.Rd man/make_cont_fit.Rd man/make_gsea_plot.Rd man/make_permute_sort_df.Rd man/multi_broad_wrapper.Rd man/single_broad_wrapper.Rd man/uniquefy_res_by_group.Rd tests/testthat.R tests/testthat/test_cmap.R

lefeverde/QSPpaper documentation built on Jan. 12, 2023, 11:14 a.m.

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