broad_cmap_score: Calculates CMAP score using the Broad's latest methodology...
In lefeverde/QSPpaper: Analysis notebooks and functions for NAFLD QSP paper
broad_cmap_score R Documentation
Calculates CMAP score using the Broad's latest methodology for a single instance
Description
This function calculates the CMAP score according to the method outlined here for a single instance of upregulated-genes, down-regulated genes and drug-signature
Usage
broad_cmap_score(up_genes, down_genes, drug_sig_vec)
Arguments
up_genes
vector of up-regulated genes
down_genes
vector of down-regulated genes
drug_sig_vec
drug signature vector
lefeverde/QSPpaper documentation built on Jan. 12, 2023, 11:14 a.m.
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| broad_cmap_score | R Documentation |
Calculates CMAP score using the Broad's latest methodology for a single instance
Description
This function calculates the CMAP score according to the method outlined here for a single instance of upregulated-genes, down-regulated genes and drug-signature
Usage
broad_cmap_score(up_genes, down_genes, drug_sig_vec)
Arguments
up_genes |
vector of up-regulated genes |
down_genes |
vector of down-regulated genes |
drug_sig_vec |
drug signature vector |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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