kegg_gsea_by_coef: Wrapper to do GSEA on tidy results
In lefeverde/QSPpaper: Analysis notebooks and functions for NAFLD QSP paper
kegg_gsea_by_coef R Documentation
Wrapper to do GSEA on tidy results
Description
Wrapper to do GSEA on tidy results
Usage
kegg_gsea_by_coef(res_df, nPerm = 10000, pvalueCutoff = 0.1)
Arguments
res_df
a tidy results data.frame of genes (see get_limma_results)
nPerm
number of permutations to run
pvalueCutoff
p-value cutoff of output to retain
Value
a tidy results data.frame of KEGG pathways
lefeverde/QSPpaper documentation built on Jan. 12, 2023, 11:14 a.m.
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| kegg_gsea_by_coef | R Documentation |
Wrapper to do GSEA on tidy results
Description
Wrapper to do GSEA on tidy results
Usage
kegg_gsea_by_coef(res_df, nPerm = 10000, pvalueCutoff = 0.1)
Arguments
res_df |
a tidy results data.frame of genes (see |
nPerm |
number of permutations to run |
pvalueCutoff |
p-value cutoff of output to retain |
Value
a tidy results data.frame of KEGG pathways
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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