calculate_pert_score: Calculates the perturbagen summary score
In lefeverde/QSPpaper: Analysis notebooks and functions for NAFLD QSP paper
calculate_pert_score R Documentation
Calculates the perturbagen summary score
Description
Calculates the perturbagen summary score
Usage
calculate_pert_score(pert_cell_mat, quant_thresh = 0.67, quant_type = 5)
Arguments
pert_cell_mat
output from calculate_pert_cell_score
quant_thresh
percentile threshold. Default is .67 which was used in Subramanian 2017
quant_type
This is how the quantiles are calculated. See quantile
lefeverde/QSPpaper documentation built on Jan. 12, 2023, 11:14 a.m.
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| calculate_pert_score | R Documentation |
Calculates the perturbagen summary score
Description
Calculates the perturbagen summary score
Usage
calculate_pert_score(pert_cell_mat, quant_thresh = 0.67, quant_type = 5)
Arguments
pert_cell_mat |
output from calculate_pert_cell_score |
quant_thresh |
percentile threshold. Default is .67 which was used in Subramanian 2017 |
quant_type |
This is how the quantiles are calculated. See quantile |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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