get_random_cmap_scores: Runs the permutation testing to get a vector of CMAP scores

In lefeverde/QSPpaper: Analysis notebooks and functions for NAFLD QSP paper

Runs the permutation testing to get a vector of CMAP scores

Description

Runs the permutation testing to get a vector of CMAP scores

Usage

get_random_cmap_scores(
  up_genes,
  down_genes,
  gctx_file,
  cids = NULL,
  n_perm = 1000,
  num_chunks = 4,
  seed = NULL,
  n_cores = 3
)

Arguments

up_genes	vector of up-regulated genes
down_genes	vector of down-regulated genes
gctx_file	gctx file
cids	signatures to parse (see parse.gctx)
n_cores	number of cores

lefeverde/QSPpaper documentation built on Jan. 12, 2023, 11:14 a.m.