single_broad_wrapper: Wrapper to run the 'broad_cmap_score' for a single gene set
In lefeverde/QSPpaper: Analysis notebooks and functions for NAFLD QSP paper
single_broad_wrapper R Documentation
Wrapper to run the broad_cmap_score for a single gene set
Description
This wrapper gets the CMAP scores for a single up and down-regulated gene set across all drug signatures
Usage
single_broad_wrapper(up_genes, down_genes, drug_sig_list, n_cores)
Arguments
up_genes
vector of up-regulated genes
down_genes
vector of down-regulated genes
drug_sig_list
list of drug signatures
n_cores
number of cores
lefeverde/QSPpaper documentation built on Jan. 12, 2023, 11:14 a.m.
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| single_broad_wrapper | R Documentation |
Wrapper to run the broad_cmap_score for a single gene set
Description
This wrapper gets the CMAP scores for a single up and down-regulated gene set across all drug signatures
Usage
single_broad_wrapper(up_genes, down_genes, drug_sig_list, n_cores)
Arguments
up_genes |
vector of up-regulated genes |
down_genes |
vector of down-regulated genes |
drug_sig_list |
list of drug signatures |
n_cores |
number of cores |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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