doubledeepms__plot_heatmap: doubledeepms__plot_heatmap

In lehner-lab/doubledeepms: Analysis scripts to reproduce the figures and results from doubleDeepPCA manuscript

doubledeepms__plot_heatmap

Description

Plot free energy heatmap.

Usage

doubledeepms__plot_heatmap(input_dt, variable_name, metric_name,
  output_file, width = 10, height = 4, plot_title = "",
  colour_clip = 4, colour_low = "blue", colour_high = "red",
  colour_mid = "lightgrey", colour_mid_text = "grey")

Arguments

input_dt	input data.table (required)
variable_name	variable name for heatmap cells (required)
metric_name	input data.table (required)
output_file	plot output file path (required)
width	plot width in inches (default:10)
height	plot height in inches (default:4)
plot_title	main title for plot (default:empty)
colour_clip	maximum absolute value of colour scale (default:4)
colour_low	colour scale lower limit colour (default:blue)
colour_high	colour scale upper limit colour (default:red)
colour_mid	colour scale zero colour (default:lightgrey)
colour_mid_text	text mid colour (default:grey)

Value

Nothing

lehner-lab/doubledeepms documentation built on July 21, 2023, 4:10 a.m.