doubledeepms__plot_loadings: doubledeepms__plot_loadings

In lehner-lab/doubledeepms: Analysis scripts to reproduce the figures and results from doubleDeepPCA manuscript

doubledeepms__plot_loadings

Description

PCA biplot scatterplot matrix.

Usage

doubledeepms__plot_loadings(pca_obj, output_file, plot_categories,
  plot_colours, mono_cols = c("white", "grey", "lightgrey", "darkgrey"),
  comps = 1:5, plot_symbol = 19, points_cex = 1, width = 10,
  height = 10)

Arguments

pca_obj	result of call to princomp (required)
output_file	path to output plot (required)
plot_categories	a character vector of category names (required)
plot_colours	a character vector of category colours (required)
mono_cols	a character vector of monochrome colours (to plot in background)
comps	a numeric vector of principle component indices (default:1:5)
plot_symbol	plot symbol (default:19)
points_cex	points cex (default:1)
width	plot width (default:10)
height	plot height (default:10)

Value

Nothing

lehner-lab/doubledeepms documentation built on July 21, 2023, 4:10 a.m.