doubledeepms_fitness_heatmaps: doubledeepms_fitness_heatmaps

In lehner-lab/doubledeepms: Analysis scripts to reproduce the figures and results from doubleDeepPCA manuscript

doubledeepms_fitness_heatmaps

Description

Plot fitness heatmaps.

Usage

doubledeepms_fitness_heatmaps(input_file, input_file_fitness,
  input_file_MSA = NULL, domain_name, outpath, colour_scheme,
  plot_width = 10, plot_height = 4, plot_traits = c("Abundance",
  "Binding"), execute = TRUE)

Arguments

input_file	path to MoCHI thermo model fit results (required)
input_file_fitness	path to fitness data (required)
input_file_MSA	path to MSA frequencies data (optional)
domain_name	domain name (required)
outpath	output path for plots and saved objects (required)
colour_scheme	colour scheme file (required)
plot_width	heatmap plot width in inches (default:10)
plot_height	heatmap plot height in inches (default:4)
plot_traits	traits to plot (default:Abundance, Binding)
execute	whether or not to execute the analysis (default: TRUE)

Value

Nothing

lehner-lab/doubledeepms documentation built on July 21, 2023, 4:10 a.m.