Man pages for lehner-lab/tardbpdms
Analysis scripts for processing TDP-43 DMS data from Bolognesi et al. 2019.
| tardbpdms | tardbpdms |
| tardbpdms__aa_properties | tardbpdms__aa_properties |
| tardbpdms_aa_properties_mutant_effects | tardbpdms_aa_properties_mutant_effects |
| tardbpdms__aa_properties_pca | tardbpdms__aa_properties_pca |
| tardbpdms__aa_properties_pca_doubles_loadings | tardbpdms__aa_properties_pca_doubles_loadings |
| tardbpdms__aa_properties_pca_singles_loadings | tardbpdms__aa_properties_pca_singles_loadings |
| tardbpdms__aa_properties_singles_loadings | tardbpdms__aa_properties_singles_loadings |
| tardbpdms_agg_tools_mutant_effects | tardbpdms_agg_tools_mutant_effects |
| tardbpdms_combine_toxicity | tardbpdms_combine_toxicity |
| tardbpdms__create_dir | tardbpdms__create_dir |
| tardbpdms_dimsumcounts_to_fitness | tardbpdms_dimsumcounts_to_fitness |
| tardbpdms_epistasis_analysis | tardbpdms_epistasis_analysis |
| tardbpdms__format_dir | tardbpdms__format_dir |
| tardbpdms__gg_color_hue | tardbpdms__gg_color_hue |
| tardbpdms__ggpairs_binhex | tardbpdms__ggpairs_binhex |
| tardbpdms__glm_prenorm | tardbpdms__glm_prenorm |
| tardbpdms_guenther_structure_propensities | tardbpdms_guenther_structure_propensities |
| tardbpdms__guenther_structure_propensity_plot | tardbpdms__guenther_structure_propensity_plot |
| tardbpdms_human_disease_mutations | tardbpdms_human_disease_mutations |
| tardbpdms__load_toxicity | tardbpdms__load_toxicity |
| tardbpdms_num_introduced_aa_violins | tardbpdms_num_introduced_aa_violins |
| tardbpdms__plot_loadings | tardbpdms__plot_loadings |
| tardbpdms__plot_toxicity_distributions | tardbpdms__plot_toxicity_distributions |
| tardbpdms__plot_toxicity_vs_growthrate | tardbpdms__plot_toxicity_vs_growthrate |
| tardbpdms__plot_toxicity_vs_position | tardbpdms__plot_toxicity_vs_position |
| tardbpdms_PWI_heatmaps | tardbpdms_PWI_heatmaps |
| tardbpdms_quality_control | tardbpdms_quality_control |
| tardbpdms__scale_toxicity | tardbpdms__scale_toxicity |
| tardbpdms_secondary_structure_predictions | tardbpdms_secondary_structure_predictions |
| tardbpdms__single_mutant_heatmap | tardbpdms__single_mutant_heatmap |
| tardbpdms_single_mutant_heatmaps | tardbpdms_single_mutant_heatmaps |
| tardbpdms__tile_heatmap_wrapper | tardbpdms__tile_heatmap_wrapper |
| tardbpdms__toxicity_lm_summary | tardbpdms__toxicity_lm_summary |
| tardbpdms_toxicity_model_summary | tardbpdms_toxicity_model_summary |
| tardbpdms_wt_hydrophobicity | tardbpdms_wt_hydrophobicity |
