tardbpdms__single_mutant_heatmap: tardbpdms__single_mutant_heatmap

In lehner-lab/tardbpdms: Analysis scripts for processing TDP-43 DMS data from Bolognesi et al. 2019.

Description

ggplot tile heatmap wrapper.

Usage

tardbpdms__single_mutant_heatmap(input_df, variable_name = "fitness",
  mut_dict = NULL, text_size = 2.5, output_file, colour_low = "blue",
  colour_high = "red", width = 12, height = 4,
  x_annotation = "position", xaxis_angle = 90, na_colour = "grey50",
  na_text = "", cluster = "none")

Arguments

input_df	matrix of heatmap values (required)
variable_name	name of variable to use for heatmap cells (defaut:"fitness")
mut_dict	list of mutant codes where name is used to label the corresponding cells
text_size	text size (default:2.5)
output_file	path to output file (required)
colour_low	colour scale lower limit colour – passed to scale_colour_gradient2 (default:"blue")
colour_high	colour scale upper limit colour – passed to scale_colour_gradient2 (default:"red")
width	plot width in "units" (default:12)
height	plot height in "units" (default:4)
x_annotation	x-axis title (default:"position")
xaxis_angle	rotation angle for x tick labels – passed to element_text (default:90)
na_colour	colour to use for NA values (default:"grey50")
na_text	cell text annotation to use for NA values (default:empty string)
cluster	heirarchically cluster (default:none)

Value

Nothing

lehner-lab/tardbpdms documentation built on July 19, 2019, 7:24 p.m.