tardbpdms: tardbpdms

In lehner-lab/tardbpdms: Analysis scripts for processing TDP-43 DMS data from Bolognesi et al. 2019.

Description

Main analysis script.

Usage

tardbpdms(startStage = 1, stopStage = 0,
  base_dir = "/users/blehner/afaure/DMS/Results/tardbpdms_proj",
  DMS2structure_path = "/users/blehner/afaure/DMS/Code/DMS2structure",
  rerun_fitness = F, rerun_epistasis = F, rerun_structure = F,
  numCores = 10)

Arguments

startStage	Start at a specified analysis stage (default:1)
stopStage	Stop at a specified analysis stage (default:0 i.e. no stop condition)
base_dir	Base directory for all output file (default:NB private CRG server path; change accordingly)
DMS2structure_path	Path to DMS2structure repository (default:NB private CRG server path; change accordingly)
rerun_fitness	re-run fitness analysis? (default:F)
rerun_epistasis	re-run epistasis analysis? (default:F)
rerun_structure	re-run structure analysis? (default:F)
numCores	Number of available CPU cores (default:10)

Value

Nothing

lehner-lab/tardbpdms documentation built on July 19, 2019, 7:24 p.m.