Man pages for leonjessen/PepTools
PepTools - An R-package for making immunoinformatics accessible
| AMINOACIDS | Symbol translation table for the 20 standard proteogenic... |
| BGFREQS | Amino Acid Residue Background Frequencies for Kongdom All |
| BLOSUM62 | The BLOSUM62 matrix |
| BLOSUM62_PROB | The row normalised BLOSUM62* frequency matrix |
| hello | Hello, World! |
| mat_mima_scale | Min-max scale matrix |
| pep_check | Check if a vector of peptides is valid. |
| pep_clean | Translate all non-standard amino acid residue characters with... |
| pep_consensus | Retrieve the consensus sequence from a set of peptides |
| pep_encode | Encode a peptide |
| pep_encode_mat | Encode a peptide |
| pep_get_images | Get peptide images |
| pep_mat | Convert a vector of peptides to matrix form |
| pep_mutate | Mutate residues along peptide positions |
| pep_plot_images | Plot peptide images |
| pep_ran | Generate 'n' random 'k'-mers (peptides) |
| pep_score | Score a peptide against a PSSM using sum of positional... |
| pep_split | Split a peptide into residue characters |
| PEPTIDES | 5,000 9-mer peptides |
| pssm_bits | Compute the information content in bits |
| pssm_check | Check if a PSSM has the correct format |
| pssm_counts | Compute counts matrix |
| pssm_empty | Create empty Position Specific Scoring Matrix |
| pssm_empty_long | Create empty Position Specific Scoring Matrix |
| pssm_flatten | 'Flatten' PSSM to a single row |
| pssm_freqs | Compute frequency matrix |
| pssm_kld | Compute the Kullback-Leibler Divergence |
| read_fasta | Read a FASTA file |
| residue_name | Translate between amino acid residue symbols |
| vec_mima_scale | Min-max scale vector |
