pssm_check: Check if a PSSM has the correct format
In leonjessen/PepTools: PepTools - An R-package for making immunoinformatics accessible
Description
Usage
Arguments
Value
Examples
Description
Check format according to criteria: i. Is a matrix, ii. Is numeric,
iii. Has 20, 21 or 22 columns, iv. Column names only contain allowed
amino acid residues 'ARNDCQEGHILKMFPSTWYV'
Usage
1
pssm_check(PSSM)
Arguments
PSSM
A Position Specific Scoring Matrix
Value
TRUE if checks are passed, otherwise stop() is called with a message
Examples
1
2
3
pssm = pssm_empty()
pssm[1:9,1:20] = rnorm(180)
pssm_check(PSSM = pssm)
leonjessen/PepTools documentation built on May 29, 2019, 3:40 a.m.
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Description Usage Arguments Value Examples
Description
Check format according to criteria: i. Is a matrix, ii. Is numeric,
iii. Has 20, 21 or 22 columns, iv. Column names only contain allowed
amino acid residues 'ARNDCQEGHILKMFPSTWYV'
Usage
1 | pssm_check(PSSM)
|
Arguments
PSSM |
A Position Specific Scoring Matrix |
Value
TRUE if checks are passed, otherwise stop() is called with a message
Examples
1 2 3 | pssm = pssm_empty()
pssm[1:9,1:20] = rnorm(180)
pssm_check(PSSM = pssm)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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