Description Usage Arguments Value Examples
Score a peptide against a PSSM using sum of positional scores.
1 | pep_score(pep, PSSM)
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pep |
A vector of equal length peptides to be scored |
PSSM |
A Position Specific Scoring Matrix, where the number of rows must be equal to the length of the input peptides. |
A vector of scores, one for each input peptides. Scores are sorted according to input peptides.
1 2 3 | PSSM = pssm_empty(npos = 9)
PSSM[1:9,1:20] = rnorm(180)
pep_score(c("RQGQDHPTM","RGQKTTDNA","NILYEYWDY"),PSSM)
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