pep_plot_images: Plot peptide images
In leonjessen/PepTools: PepTools - An R-package for making immunoinformatics accessible
Description
Usage
Arguments
Details
Value
Examples
Description
Plot the first n encoded peptide 'images'
Usage
1
pep_plot_images(pep, n = 3)
Arguments
pep
A character vector of peptides to be plotted as 'images'
Details
Peptides are encoded using pep_encode(), resulting in peptide 'images'
Each position in the peptide become a vector of 20 values, corresponding to
the rounded log odds ratio for substituting the amino acid in the peptide
with each of the 20 standard proteogenic amino acids. The final result is a
list of peptide 'images' each with values in [0;1].
Value
A cowplot plot grid of the n first peptide 'images'
Examples
1
pep_plot_images(pep_ran(k=9,n=10))
leonjessen/PepTools documentation built on May 29, 2019, 3:40 a.m.
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Description Usage Arguments Details Value Examples
Description
Plot the first n encoded peptide 'images'
Usage
1 | pep_plot_images(pep, n = 3)
|
Arguments
pep |
A character vector of peptides to be plotted as 'images' |
Details
Peptides are encoded using pep_encode(), resulting in peptide 'images'
Each position in the peptide become a vector of 20 values, corresponding to
the rounded log odds ratio for substituting the amino acid in the peptide
with each of the 20 standard proteogenic amino acids. The final result is a
list of peptide 'images' each with values in [0;1].
Value
A cowplot plot grid of the n first peptide 'images'
Examples
1 | pep_plot_images(pep_ran(k=9,n=10))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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