pssm_kld: Compute the Kullback-Leibler Divergence
In leonjessen/PepTools: PepTools - An R-package for making immunoinformatics accessible
Description
Usage
Arguments
Value
Examples
Description
From a matrix of amino acid frequencies, where the peptide positions are the
rows and where the amino acids are the columns and the sum of the
rows all are equal to one, calculate the compute the Kullback-Leibler
Divergence for each [p_i,res_j]
Usage
1
pssm_kld(PSSM)
Arguments
PSSM
A Position Specific Scoring Matrix of amino acid frequencies
Value
A PSSM of computed Kullback-Leibler Divergences for each [p_i,res_j]
Examples
1
pep_ran(n = 100, k = 9) %>% pssm_freqs %>% pssm_kld
leonjessen/PepTools documentation built on May 29, 2019, 3:40 a.m.
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Description Usage Arguments Value Examples
Description
From a matrix of amino acid frequencies, where the peptide positions are the
rows and where the amino acids are the columns and the sum of the
rows all are equal to one, calculate the compute the Kullback-Leibler
Divergence for each [p_i,res_j]
Usage
1 | pssm_kld(PSSM)
|
Arguments
PSSM |
A Position Specific Scoring Matrix of amino acid frequencies |
Value
A PSSM of computed Kullback-Leibler Divergences for each [p_i,res_j]
Examples
1 | pep_ran(n = 100, k = 9) %>% pssm_freqs %>% pssm_kld
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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