Files in leppott/BCGcalc

Biological Condition Gradient, calculator

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md .github/ISSUE_TEMPLATE/request_metric_model.md NEWS.md NEWS.rmd R/BCG.ContLevel.R R/BCG.Level.Assignment.R R/BCG.Level.Membership.R R/BCG.Metric.Membership.R R/BCGcalc.R R/data.R R/runShiny.R README.md README.rmd data-raw/Create_Sticker.R data-raw/ProcessData_MetricValues.R data-raw/ProcessData_TaxaMaster_Ben_BCG_PacNW.R data-raw/ProcessData_VAA.R data-raw/ProcessGIS_Eco3_ORWA.R data-raw/ProcessGIS_Eco3_ORWA_BCGproj.R data-raw/ProcessGIS_MaritimeBCGclass.R data-raw/ProcessGIS_NHDplus_catch_ORWA.R data-raw/ProcessGIS_NHDplus_flowline_ORWA.R data-raw/ProcessGIS_NorWest_ORWA.R data-raw/ProcessShiny_CopyRMD.R data-raw/ProcessShiny_RMD2HTML.R data-raw/ProcessShiny_ZipExamples.R inst/extdata/examples/BCGcalc_ExampleFilesCopyTemp.R inst/extdata/examples/scripts/Calc_BCGcalc.R inst/extdata/examples/scripts/Calc_BobBiodiversityIndex.R inst/extdata/examples/scripts/Calc_FuzzyTherm.R inst/extdata/examples/scripts/FileBuilder_AssignIndexClass.R inst/extdata/examples/scripts/FileBuilder_MergeFiles.R inst/extdata/examples/scripts/FileBuilder_TaxaTranslateAssignAttributes.R inst/extdata/examples/scripts/MTTI_example_20230907.r inst/rmd/Results_BCG_Summary.Rmd inst/rmd/Results_BDI_Summary.Rmd inst/rmd/Results_FuzzyThermal_Summary.Rmd inst/rmd/Results_Thermal_Summary.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_BCG_LevAssign.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_BCG_LevMemb.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_BCG_MetMemb.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_BCG_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_BCG_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_BCG_3Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_BDI_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_BDI_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_BDI_3Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_FishThermalClass_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_MTTI_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_MTTI_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_MTTI_3Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Metrics_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Metrics_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Metrics_3Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Metrics_Thermal_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Metrics_Thermal_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Metrics_Thermal_3Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Model_Thermal_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Model_Thermal_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Calc_Model_Thermal_3Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_IndexClassParam_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_IndexClassParam_2Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_IndexClass_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_IndexClass_2Input.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_IndexClass_2Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_MergeFiles_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_MergeFiles_2Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_TaxaTrans_1About.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_FB_TaxaTrans_2Output.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Map.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_RedundantTaxa.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Resources.Rmd inst/shiny-examples/BCGcalc/external/RMD/ShinyHTML_Troubleshoot.Rmd inst/shiny-examples/BCGcalc/external/RMD_Results/Results_BCG_Summary.Rmd inst/shiny-examples/BCGcalc/external/RMD_Results/Results_BDI_Summary.Rmd inst/shiny-examples/BCGcalc/external/RMD_Results/Results_FuzzyThermal_Summary.Rmd inst/shiny-examples/BCGcalc/external/RMD_Results/Results_MTTI_Summary.Rmd inst/shiny-examples/BCGcalc/external/db_main_body.R inst/shiny-examples/BCGcalc/external/db_main_sb.R inst/shiny-examples/BCGcalc/external/tab_Help.R inst/shiny-examples/BCGcalc/external/tab_about.R inst/shiny-examples/BCGcalc/external/tab_calc_bcg.R inst/shiny-examples/BCGcalc/external/tab_calc_bdi.R inst/shiny-examples/BCGcalc/external/tab_calc_fishthermalclass.R inst/shiny-examples/BCGcalc/external/tab_calc_mtti.R inst/shiny-examples/BCGcalc/external/tab_calc_thermalfuzzy.R inst/shiny-examples/BCGcalc/external/tab_calc_thermalmetrics.R inst/shiny-examples/BCGcalc/external/tab_filebuilder.R inst/shiny-examples/BCGcalc/external/tab_filebuilder_indexclass.R inst/shiny-examples/BCGcalc/external/tab_filebuilder_indexclassparam.R inst/shiny-examples/BCGcalc/external/tab_filebuilder_mergefiles.R inst/shiny-examples/BCGcalc/external/tab_filebuilder_taxatrans.R inst/shiny-examples/BCGcalc/external/tab_import.R inst/shiny-examples/BCGcalc/external/tab_mainbody.R inst/shiny-examples/BCGcalc/external/tab_map.R inst/shiny-examples/BCGcalc/external/tab_markexcl.R inst/shiny-examples/BCGcalc/external/tab_report_multi.R inst/shiny-examples/BCGcalc/external/tab_report_single.R inst/shiny-examples/BCGcalc/external/tab_resources.R inst/shiny-examples/BCGcalc/external/tab_subsample.R inst/shiny-examples/BCGcalc/external/tab_taxamaps.R inst/shiny-examples/BCGcalc/external/tab_troubleshoot.R inst/shiny-examples/BCGcalc/global.R inst/shiny-examples/BCGcalc/scripts/helper_functions.R inst/shiny-examples/BCGcalc/server.R inst/shiny-examples/BCGcalc/ui.R inst/shiny-examples/BCGcalc/www/links/BCGLevel1_BiodiversityIndex_MaritimePNW_4-19-2019.pdf inst/shiny-examples/BCGcalc/www/links/BMT_MetricCalc_ThermalIndicator.R inst/shiny-examples/BCGcalc/www/links/MTTI_Prelim_20220401.pdf inst/shiny-examples/BCGcalc/www/links/PNMR_BCG_Report_20220929.pdf man/BCG.ContLevelText.Rd man/BCG.Level.Assignment.Rd man/BCG.Level.Membership.Rd man/BCG.Metric.Membership.Rd man/BCGcalc-package.Rd man/TaxaMaster_Ben_BCG_PugLowWilVal.Rd man/metrics_values.Rd man/runShiny.Rd tests/testthat.R tests/testthat/test_bcgcalc.R vignettes/BCGcalc_Map.R vignettes/BCGcalc_Map.Rmd vignettes/BCGcalc_README_20180919.pdf vignettes/MetricNames.pdf vignettes/vignette_BCGcalc.R vignettes/vignette_BCGcalc.Rmd