Files in leppott/BCGcalc
Biological Condition Gradient, calculator

.Rbuildignore

.github/.gitignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md .github/ISSUE_TEMPLATE/request_metric_model.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

BCGcalc.Rproj

DESCRIPTION

LICENSE

NAMESPACE

NEWS

NEWS.md NEWS.rmd R/BCG.ContLevel.R R/BCG.Level.Assignment.R R/BCG.Level.Membership.R R/BCG.Metric.Membership.R R/BCGcalc.R R/data.R R/runShiny.R README.md README.rmd

_pkgdown.yml

data-raw/BCG_figure.png

data-raw/BCG_figure_bw.png

data-raw/Create_Sticker.R data-raw/ProcessData_MetricValues.R data-raw/ProcessData_TaxaMaster_Ben_BCG_PacNW.R data-raw/ProcessData_VAA.R data-raw/ProcessGIS_Eco3_ORWA.R data-raw/ProcessGIS_Eco3_ORWA_BCGproj.R data-raw/ProcessGIS_MaritimeBCGclass.R data-raw/ProcessGIS_NHDplus_catch_ORWA.R data-raw/ProcessGIS_NHDplus_flowline_ORWA.R data-raw/ProcessGIS_NorWest_ORWA.R data-raw/ProcessShiny_CopyRMD.R data-raw/ProcessShiny_RMD2HTML.R data-raw/ProcessShiny_ZipExamples.R

data/TaxaMaster_Ben_BCG_PugLowWilVal.rda

data/data_GIS_BCGclass.rda

data/data_GIS_eco3_orwa.rda

data/data_GIS_eco3_orwa_bcg.rda

data/metrics_values.rda

inst/extdata/Data_BCG_PugLowWilVal.csv

inst/extdata/Data_BCG_PugLowWilVal.xlsx

inst/extdata/ExampleDataFile.xlsx

inst/extdata/ExampleMunge_Slope.xlsx

inst/extdata/ExampleMunge_UnformatedData.xlsx

inst/extdata/MetricFlags.xlsx

inst/extdata/MetricNames.xlsx

inst/extdata/PL_WV_ThermalIndicator_20180326.xlsx

inst/extdata/Rules.xlsx

inst/extdata/TaxaMaster_Bug_BCG_PugLowWilVal.xlsx

inst/extdata/_Input_HiGradHiElev_noExclude_20220108.csv

inst/extdata/_Input_HiGradHiElev_noExclude_20220108_small.csv

inst/extdata/examples/BCGcalc_ExampleFilesCopyTemp.R

inst/extdata/examples/data/TestData_Calc_BCGcalc.csv

inst/extdata/examples/data/TestData_Calc_BobBDVI.csv

inst/extdata/examples/data/TestData_Calc_ThermPrefMetrics.csv

inst/extdata/examples/data/TestData_FileBuilder_AssignIndexClass.csv

inst/extdata/examples/data/TestData_FileBuilder_Merge_Samples.csv

inst/extdata/examples/data/TestData_FileBuilder_Merge_Sites.csv

inst/extdata/examples/data/TestData_FileBuilder_TaxaTrans.csv

inst/extdata/examples/data/TestData_MTTI_20230414.csv

inst/extdata/examples/scripts/Calc_BCGcalc.R inst/extdata/examples/scripts/Calc_BobBiodiversityIndex.R inst/extdata/examples/scripts/Calc_FuzzyTherm.R inst/extdata/examples/scripts/FileBuilder_AssignIndexClass.R inst/extdata/examples/scripts/FileBuilder_MergeFiles.R inst/extdata/examples/scripts/FileBuilder_TaxaTranslateAssignAttributes.R inst/extdata/examples/scripts/MTTI_example_20230907.r

inst/figures/logo.png

inst/figures/logo_bw.png

inst/rmd/Results_BCG_Summary.Rmd inst/rmd/Results_BDI_Summary.Rmd inst/rmd/Results_FuzzyThermal_Summary.Rmd inst/rmd/Results_Thermal_Summary.Rmd

inst/shiny-examples/BCGcalc/data/BCGcalc_Shiny_map_inputs_20230828.xlsx

inst/shiny-examples/BCGcalc/data/MTTI_model/wa_MTTI.mar23.Rdata

inst/shiny-examples/BCGcalc/data/nhdplusVAA.fst

inst/shiny-examples/BCGcalc/data/remove.txt

inst/shiny-examples/BCGcalc/data/report_color_thresholds.csv

inst/shiny-examples/BCGcalc/external/RMD/files/BCGcalc_ReqFields_20230203.xlsx

inst/shiny-examples/BCGcalc/external/RMD/files/BDI_ReqFields_20230817.xlsx

inst/shiny-examples/BCGcalc/external/RMD/files/FuzzySet_ReqFields_20230606.xlsx

inst/shiny-examples/BCGcalc/external/RMD/files/InputFileSubtabs.xlsx

inst/shiny-examples/BCGcalc/external/RMD/files/MTTI_ReqFields_20230606.xlsx

inst/shiny-examples/BCGcalc/external/RMD/files/OutputFileSubtabs.xlsx

inst/shiny-examples/BCGcalc/external/RMD/files/ThermPrefMetric_ReqFields_20230203.xlsx

inst/shiny-examples/BCGcalc/external/RMD/images/About_Fig1_PNMR_StudyArea.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/About_Fig2_BCG.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/FileBuilder_AssignNameClass_About_Fig1.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/FileBuilder_IndexClassParam.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/FileBuilder_MergeFiles_About_Fig1.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/FileBuilder_TaxaTrans_About_Fig1.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/Resources_Fig1_StreamCat_SpatialScales.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/Resources_Fig2_NHDPlusV2_Hydroregions.jpg

inst/shiny-examples/BCGcalc/external/RMD/images/Resources_Fig3_NorWeST_ProcessingUnits2021.jpg

inst/shiny-examples/BCGcalc/results/remove.txt

inst/shiny-examples/BCGcalc/scripts/helper_functions.R inst/shiny-examples/BCGcalc/server.R inst/shiny-examples/BCGcalc/ui.R inst/shiny-examples/BCGcalc/www/links/BCGLevel1_BiodiversityIndex_MaritimePNW_4-19-2019.pdf

inst/shiny-examples/BCGcalc/www/links/BCGcalc_ReqFields_20230203.xlsx

inst/shiny-examples/BCGcalc/www/links/BDI_ReqFields_20230817.xlsx

inst/shiny-examples/BCGcalc/www/links/BMT_MetricCalc_ThermalIndicator.R

inst/shiny-examples/BCGcalc/www/links/FuzzySet_ReqFields_20230606.xlsx

inst/shiny-examples/BCGcalc/www/links/MTTI_Prelim_20220401.pdf

inst/shiny-examples/BCGcalc/www/links/MTTI_ReqFields_20230606.xlsx

inst/shiny-examples/BCGcalc/www/links/Memo_FuzzySet_Thermal_20230606.docx

inst/shiny-examples/BCGcalc/www/links/NorWeST_ORWA_20230920.kmz

inst/shiny-examples/BCGcalc/www/links/ORWA_Shinyapp_ThermPref_20220914.xlsx

inst/shiny-examples/BCGcalc/www/links/PNMR_BCG_Report_20220929.pdf

inst/shiny-examples/BCGcalc/www/links/PNMR_BCG_report_20220930_minusSupp.zip

inst/shiny-examples/BCGcalc/www/links/PNMR_BCGclasses_20230920.kmz

inst/shiny-examples/BCGcalc/www/links/RedundantTaxa_20231031.docx

inst/shiny-examples/BCGcalc/www/links/Test1_BCGcalc_input.csv

inst/shiny-examples/BCGcalc/www/links/Test1_Calc_FuzzyTemp_20230605.csv

inst/shiny-examples/BCGcalc/www/links/Test1_Calc_MTTI_20230605.csv

inst/shiny-examples/BCGcalc/www/links/Test1_FileBuilder_AssignNameClass.csv

inst/shiny-examples/BCGcalc/www/links/Test1_FileBuilder_IndexClassParameters_20230605.csv

inst/shiny-examples/BCGcalc/www/links/Test1_FileBuilder_MergeFiles.zip

inst/shiny-examples/BCGcalc/www/links/Test1_FileBuilder_TaxaTransAttr.csv

inst/shiny-examples/BCGcalc/www/links/Test1_ThermPrefMetric_input.csv

inst/shiny-examples/BCGcalc/www/links/ThermPrefMetric_ReqFields_20230203.xlsx

inst/shiny-examples/BCGcalc/www/links/ThermPrefMetrics_metadata.xlsx

inst/shiny-examples/BCGcalc/www/links/ThermalMetrics_Rscript_TestFiles_20221013.zip

inst/shiny-examples/BCGcalc/www/links/examples_all.zip

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_BCG_LevAssign.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_BCG_LevMemb.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_BCG_MetMemb.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BCG.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BCG_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BCG_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BCG_3Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BDI.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BDI_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BDI_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_BDI_3Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_MTTI_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_MTTI_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_MTTI_3Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_2Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_3Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_Thermal_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_Thermal_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Metrics_Thermal_3Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Model_Thermal.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Model_Thermal_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Model_Thermal_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Calc_Model_Thermal_3Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_IndexClassParam_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_IndexClassParam_2Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_IndexClass_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_IndexClass_2Input.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_IndexClass_2Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_MergeFiles_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_MergeFiles_2Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_TaxaTrans_1About.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_FB_TaxaTrans_2Output.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Map.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_RedundantTaxa.html

inst/shiny-examples/BCGcalc/www/rmd_html/ShinyHTML_Resources.html

internalHyperlinks.xlsx

man/BCG.ContLevelText.Rd man/BCG.Level.Assignment.Rd man/BCG.Level.Membership.Rd man/BCG.Metric.Membership.Rd man/BCGcalc-package.Rd man/TaxaMaster_Ben_BCG_PugLowWilVal.Rd man/metrics_values.Rd man/runShiny.Rd tests/testthat.R tests/testthat/test_bcgcalc.R

vignettes/.install_extras

vignettes/BCGcalc_Map.R vignettes/BCGcalc_Map.Rmd vignettes/BCGcalc_README_20180919.pdf vignettes/MetricNames.pdf vignettes/vignette_BCGcalc.R vignettes/vignette_BCGcalc.Rmd

leppott/BCGcalc documentation built on April 12, 2024, 8:35 a.m.

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leppott/BCGcalc
Biological Condition Gradient, calculator

Files in leppott/BCGcalc
Biological Condition Gradient, calculator

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leppott/BCGcalc Biological Condition Gradient, calculator

Files in leppott/BCGcalc Biological Condition Gradient, calculator

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We want your feedback!

leppott/BCGcalc
Biological Condition Gradient, calculator

Files in leppott/BCGcalc
Biological Condition Gradient, calculator