Files in leylabmpi/LeyLabRMisc

Ley Lab misc R functions, rmd templates, etc.

LeyLabRMisc_0.2.0.pdf R/LeyLabRMisc-package.R R/ancombc.R R/cluster.R R/ena_api.R R/genome_profiling.R R/init.R R/io.R R/itol.R R/mg_profiling.R R/mgnify_api.R R/misc.R R/ml.R R/mlr.R R/multivar.R R/phyloseq.R R/plotting.R R/system.R R/wetlab.R README.md inst/rmarkdown/templates/NDY/skeleton/skeleton.Rmd man/Fread.Rd man/Init.Rd man/Plot.Rd man/Robj_md5sum.Rd man/ancombc_tidy.Rd man/ancombc_unbiased_abundances.Rd man/as.Num.Rd man/bash_job.Rd man/beta2mtx.Rd man/calc_PCoA.Rd man/calc_alpha_div.Rd man/calc_beta_div.Rd man/calculate_rarefaction_curves.Rd man/cat_file.Rd man/clustermq_get_logs.Rd man/clustermq_logfile.Rd man/clustermq_setup.Rd man/condaInfo.Rd man/df.dims.Rd man/dfhead.Rd man/dist_format.Rd man/dot-.add_columns.Rd man/dot-HFE.Rd man/dot-add_columns.Rd man/dot-ancombc_tidy.Rd man/dot-calc_pd.Rd man/dot-flatten_nested.Rd man/dot-get_brewer_palette.Rd man/dot-rec_search.Rd man/dot-well384_index.Rd man/dot-well96_index.Rd man/ena_get_filereport.Rd man/ena_get_search_fields.Rd man/estimate_rarified_richness.Rd man/estimate_richness_phy.Rd man/expand.grid.lower.Rd man/extract_pltdt.Rd man/fig_uuid.Rd man/files_to_list.Rd man/hello.Rd man/itol_boxplot.Rd man/itol_colorstrip.Rd man/itol_externalshape.Rd man/itol_heatmap.Rd man/itol_multibar.Rd man/itol_simplebar.Rd man/itol_symbol.Rd man/list_files.Rd man/make_dir.Rd man/mgnify_get.Rd man/mgnify_request.Rd man/mgnify_request_get.Rd man/ml_tax_HFE.Rd man/mlr_boruta_filter.Rd man/mlr_getNestedTuneResultsOptPathDf.Rd man/overlap.Rd man/p.dims.Rd man/path_get_label.Rd man/pcoa2df.Rd man/phyloseq2df.Rd man/phyloseq_rel_abund.Rd man/pipelineInfo.Rd man/qsave_obj.Rd man/readLinesTail.Rd man/read_bracken.Rd man/read_eggnog_mapper.Rd man/row_means.Rd man/row_sums.Rd man/scale_color_all.Rd man/scale_fill_all.Rd man/send_email.Rd man/size_objects.Rd man/snakemakeInfo.Rd man/split_path.Rd man/summary_x.Rd man/taxonomy_levels.Rd man/tidy_pcoa.Rd man/to_rds.Rd man/unique_n.Rd man/well2index.Rd man/write_table.Rd renv/activate.R