SearchResult-class: Class to contain individual search result data.

In lgatto/RpepXML: R interface to the pepXML standard

Description

Class implementing the search_result of the pepXML standard.

Slots

searchHits:

Object of class "list" containing a list of search hits, see "SearchHit".

searchId:

Object of class "integer", id of the search hit.

.__classVersion__:

Object of class "Versions", documenting the version of the class.

Extends

Class "Versioned", directly.

Methods

filterHits

signature(object = "SearchResult"): see filterHits-methods.

hitRank

signature(object = "SearchResult"): see hitRank-methods.

nProteins

signature(object = "SearchResult"): see nProteins-methods.

nSearchHits

signature(object = "SearchResult"): see nSearchHits-methods.

pepSequence

signature(object = "SearchResult"): see pepSequence-methods.

proteins

signature(object = "SearchResult"): see proteins-methods.

scores

signature(object = "SearchResult"): see scores-methods.

searchHits<-

signature(object = "SearchResult", value = "list"): see searchHits-methods.

searchHits

signature(object = "SearchResult"): see searchHits-methods.

searchId<-

signature(object = "SearchResult", value = "integer"): see searchId-methods.

searchId

signature(object = "SearchResult"): see searchId-methods.

show

signature(object = "SearchResult"): see show-methods.

Author(s)

Laurent Gatto

See Also

"MSMSpepXML", "SpectrumQuery", "SearchHit"

Examples

showClass("SearchResult")

lgatto/RpepXML documentation built on May 21, 2019, 6:04 a.m.