parseMSMSpepXML: Read a pepXML file into R
In lgatto/RpepXML: R interface to the pepXML standard

This function reads a pepXML given as parameter and parses it, producing an object of class "MSMSpepXML".

1	parseMSMSpepXML(pepfile, verbose = TRUE)

`pepfile`	the name of the pepXML file which the data are to be read from.
`verbose`	a logical value indicating if a progress bar should be displayed.

an object of class "MSMSpepXML".

The pepXML file should not contain any XML comments as these are not (yet) handled properly and will be considered as nodes in the XML tree.

Laurent Gatto

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 pepxml <- system.file("extdata","tinySearch.pepXML",package="RpepXML")
 x <- parseMSMSpepXML(pepxml)
 show(x)

lgatto/RpepXML documentation built on May 21, 2019, 6:04 a.m.

lgatto/RpepXML index

RpepXML: R interface to the pepXML format.

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

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