proteins-methods: Returns the proteins associated with identifies peptides.
In lgatto/RpepXML: R interface to the pepXML standard
Description
This method returns and sets the protein identifiers for individual
search hits. The values are set automatically when creating an
instance of "MSMSpepXML" with
parseMSMSpepXML, and should generally not need to be
changed.
Methods
signature(object = "SearchHit")-
an object of class "SearchHit" is used as
parameter and a character vector of possibly multiple proteins is
returned.
signature(object = "SearchResult")-
an object of class "SearchResult" is used as
parameter and a character vector of all possibly alternative
proteins for the search hits is returned.
signature(object = "SpectrumQuery")-
an object of class "SpectrumQuery" is used as
parameter and a character vector of all possibly alternative
proteins for the search results is returned.
signature(object = "MSMSpepXML")-
an object of class "MSMSpepXML" is used as
parameter and a list of characters of length equal to the number
of spectrum queries is returned.
lgatto/RpepXML documentation built on May 21, 2019, 6:04 a.m.
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Description
This method returns and sets the protein identifiers for individual
search hits. The values are set automatically when creating an
instance of "MSMSpepXML" with
parseMSMSpepXML, and should generally not need to be
changed.
Methods
signature(object = "SearchHit")-
an object of class
"SearchHit"is used as parameter and a character vector of possibly multiple proteins is returned. signature(object = "SearchResult")-
an object of class
"SearchResult"is used as parameter and a character vector of all possibly alternative proteins for the search hits is returned. signature(object = "SpectrumQuery")-
an object of class
"SpectrumQuery"is used as parameter and a character vector of all possibly alternative proteins for the search results is returned. signature(object = "MSMSpepXML")-
an object of class
"MSMSpepXML"is used as parameter and a list of characters of length equal to the number of spectrum queries is returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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