Man pages for lianos/multiGSEA.shiny
Provides shiny components to visualize multilGSEA results
| constructGseaResultTable | Builds the table of GSEA statistics to present to the user |
| explore | Interactively explore a MultiGSEAResult via a shiny app |
| feature-link-functions | Transforms a column in feature table to an external link for... |
| geneSetContrastViewModule | A module to encapsulate browsing differential statistics of a... |
| geneSetSelectModule | A module that creates a dynamic selectizeInput for a... |
| initialized | Tests if a module is initialized |
| mgGeneSetSummaryByGene | Module that displays gene sets related to (by membership) a... |
| mgResultFilter | Shiny module to pick GSEA method and fdr params used for... |
| mgTableBrowserModule | A module to explore the GSEA statistics generated from a... |
| mgVolcano | Creates a volcano plot from a source input |
| MultiGSEAResultContainer | A wrapper for a MultiGSEAResult that makes explicity some... |
| reactiveGeneSetDb | A ReactiveGeneSetDb for use in the shiiny world. |
| reactiveGeneSetDbFilterUI | UI components to filter a GeneSetDb by collection and set... |
| reactiveGeneSetSelect | A geneset selector for a ReactiveGeneSetDb |
| renderFeatureStatsDataTable | Creates a DT::datatable of feature level statistics for use... |
| renderGseaResultTableDataTable | Creates a DT::datatalbe of geneset level GSEA results for use... |
| round.dt | Rounds every numeric column of a data.table to given... |
| roundDT | Round the numeric columns of a DT |
| summaryHTMLTable.multiGSEA | Creates an HTML-ized version of 'tabuleResults' |
| unselected | Checks if the return value from a selectInput looks like it's... |
| userDefinedGeneSetDb | Creates a GeneSetDb from a user-specfied gene set definition... |
