mgTableBrowserModule: A module to explore the GSEA statistics generated from a...

In lianos/multiGSEA.shiny: Provides shiny components to visualize multilGSEA results

Description

The UI is a DT::datatable of GSEA statistics for the selected method. The module returns a list with the following reactive elements:

$stats

The table of gene sets and their statistics that pass the prescribed fdr thershold

$selected

The geneset that is currently "active"/selected by the user. This is defined as <collection>_::_<name>

You probably want to observeEvent(this$selected) in your server.R (or similar) so you can react to user clicks on different gene sets

Usage

mgTableBrowserUI(id)

mgTableBrowser(input, output, session, mgc, method, fdr, server = TRUE)

Arguments

id	the shiny id of the UI module
input	shiny server input object
output	shiny server output object
session	shiny server session object
mgc	the MultiGSEAResultContainer object
method	a reactive that determines which method to explore from this result
fdr	a reactive that gives the fdr threshold to filter results in the table by.

lianos/multiGSEA.shiny documentation built on Sept. 15, 2020, 10:45 p.m.