feature-link-functions: Transforms a column in feature table to an external link for...

In lianos/multiGSEA.shiny: Provides shiny components to visualize multilGSEA results

Description

When listing features in an interactive table, it's often useful to link the feature to an external webpage that has more information about that feature. Functions to genes to their NCBI or GeneCards webpage via their feature_id are provided via ncbi.entrez.link and genecards.entrez.link. The column used to transform into a link is specified by link.col.

If link.col is not found in the data.frame x then the provided functions are NO-OPS, ie. the same data.frame is simply returned.

Usage

ncbi.entrez.link(x, link.col = "symbol")

genecards.entrez.link(x, link.col = "symbol")

Arguments

x	a data.frame from logFC(MultiGSEAResult)
link.col	the column in x that should be transformed to a link

Value

a modified x with an html link in link.col

lianos/multiGSEA.shiny documentation built on Sept. 15, 2020, 10:45 p.m.