Man pages for lianos/multiGSEA.shiny
Provides shiny components to visualize multilGSEA results

constructGseaResultTableBuilds the table of GSEA statistics to present to the user
exploreInteractively explore a MultiGSEAResult via a shiny app
feature-link-functionsTransforms a column in feature table to an external link for...
geneSetContrastViewModuleA module to encapsulate browsing differential statistics of a...
geneSetSelectModuleA module that creates a dynamic selectizeInput for a...
initializedTests if a module is initialized
mgGeneSetSummaryByGeneModule that displays gene sets related to (by membership) a...
mgResultFilterShiny module to pick GSEA method and fdr params used for...
mgTableBrowserModuleA module to explore the GSEA statistics generated from a...
mgVolcanoCreates a volcano plot from a source input
MultiGSEAResultContainerA wrapper for a MultiGSEAResult that makes explicity some...
reactiveGeneSetDbA ReactiveGeneSetDb for use in the shiiny world.
reactiveGeneSetDbFilterUIUI components to filter a GeneSetDb by collection and set...
reactiveGeneSetSelectA geneset selector for a ReactiveGeneSetDb
renderFeatureStatsDataTableCreates a DT::datatable of feature level statistics for use...
renderGseaResultTableDataTableCreates a DT::datatalbe of geneset level GSEA results for use...
round.dtRounds every numeric column of a data.table to given...
roundDTRound the numeric columns of a DT
summaryHTMLTable.multiGSEACreates an HTML-ized version of 'tabuleResults'
unselectedChecks if the return value from a selectInput looks like it's...
userDefinedGeneSetDbCreates a GeneSetDb from a user-specfied gene set definition...
lianos/multiGSEA.shiny documentation built on Sept. 15, 2020, 10:45 p.m.